Used in: gor


Takes in a GOR stream of hardcalls stored in horizontal manner and groups together the lines corresponding to the same reference allele at a given position. The genotypes should be stored in a column named Values, and the reference and alternative alleles in a column whose name starts with ref and alt, respectively.


gor ... | VARGROUP [-gc groupCols]


``-gc groupcols

The cols to group on, in addition to chrom, pos and the reference column.

-sep separator

The separator to separate the outcoming genotypes with. Default to comma.